Microbiome Research Reports
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Editor-in-Chief: Marco Ventura
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Editor-in-Chief: Marco Ventura
Median time to first editorial decision: 7 days
Home Articles Special Topics Volumes Webinars Videos

Microbiome Research Reports

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

Articles

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Dietary chicory rhamnogalacturonan-I modulates gut microbiota and immune responses in healthy adults

Evangelia N. Kerezoudi, ...Ignacio Rangel
Open Access Original Article DOI: 10.20517/mrr.2026.04 12 May 2026
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Mapping the genomic landscape of two key human gut microbial species: Bifidobacterium infantis and Bifidobacterium longum

Marco Ventura
Open Access Commentary DOI: 10.20517/mrr.2026.15 8 May 2026
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Intestinal mucus acts as a nutrient source and signal for Klebsiella pneumoniae

Taylor D. Ticer, ...Melinda A. Engevik
Open Access Original Article DOI: 10.20517/mrr.2025.112 28 Apr 2026
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Immunoglobulin Y protects intestinal epithelium and modulates gut microbiota

Shahna Fathima, ...Huan H Nguyen
Open Access Original Article DOI: 10.20517/mrr.2025.104 20 Apr 2026
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Development of a multi-targeted metabolomics platform for semi-quantification of faecal metabolites: a proof-of-concept analysis in human faeces

Kayo Ikuta, ...Mitsuharu Matsumoto
Open Access Original Article DOI: 10.20517/mrr.2025.85 25 Mar 2026
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Past, present, and future of microbiome-based therapies

Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access Review DOI: 10.20517/mrr.2023.80 17 Mar 2024
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A host-microbial metabolite interaction gut-on-a-chip model of the adult human intestine demonstrates beneficial effects upon inulin treatment of gut microbiome

Joanne M. DonkersJoanne M. Donkers, ... Evita van de Steeg
Open Access Original Article DOI: 10.20517/mrr.2023.79 21 Feb 2024
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Phage therapy as a revitalized weapon for treating clinical diseases

Yingjie Wang, ...Yamei Yu
Open Access Review DOI: 10.20517/mrr.2025.31 23 Sep 2025
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Diet–Microbiome Interactions in Metabolic Health: From Mechanisms to Personalized Nutrition

Prof. Liping Zhao; Prof. Chenhong Zhang; Prof. Yan Zheng

Submission Deadline: 30 Nov 2026

Published articles: 0

Genome Encyclopaedia of Human Gut Microbes

Prof. Marco Ventura

Submission Deadline: 30 Oct 2026

Published articles: 0

Coming soon.

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Themed Collections
bifidobacteria
gut microbiota
microbiome
probiotics
bacteriophage
phages
antibiotics
microbial
infant gut
microbial ecology
intestinal microbiome
host-microbe interactions
intestinal fungi
microbial ecosystems
metagenomics
microbial DNA sequencing
bifidobacterium
genomic
irritable bowel syndrome
Topic: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Topic: Exploring the Infant Microbiome: From Birth to Early Growth and Development
Topic: Microbiomes of Arthropods and Their Environments
Volume 5, Issue 2 (in progress)
Volume 5, Issue 1
Volume 4, Issue 4
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Special Issue: Akkermansia muciniphila and Its Health Benefits: From Associations to Causality
Targeting the Oncobiome: Mechanisms, Tumor Progression, and Therapeutic Interventions
Join Prof. Amedeo Amedei for a live webinar exploring tumor progression, host–microbiome interactions, and emerging therapeutic strategies.
May 26, 2026 | 10:00 AM (Italy Time)
Advancing Understanding in Microbiome Science: An Interview with Dr. David Rios‑Covian
Exploring gut microbial metabolism and its potential for innovative therapeutic applications - 2025 MRR High-Impact Paper Awardee
Microbiome Research Reports Announces 2025 Annual Academic Awards
Thanking scholars for their exceptional contributions to Microbiome Research Reports and the global microbiome community
Microbiome Research Reports Scholars Recognized among Highly Cited Researchers 2025
7 Editorial Board Members, 10 Contributing Authors, and 1 Guest Editor Honored for Outstanding Impact in Microbiology and Cross-Field Research
Microbiome Research Reports Receives Its First Impact Factor of 3.8
We are delighted to announce that Microbiome Research Reports (MRR) has received its first official Impact Factor of 3.8, as published in the 2025 edition of Clarivate's Journal Citation Reports (JCR) on June 18.

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium

MEGAnnotator2: a pipeline for the assembly and annotation of microbial genomes

Folate-producing bifidobacteria: metabolism, genetics, and relevance

Past, present, and future of microbiome-based therapies
Pilar ManriquePilar Manrique, ... David Rios-CovianDavid Rios-Covian
Open Access | Review | 17 Mar 2024
Views: | Downloads:
Download PDF
A host-microbial metabolite interaction gut-on-a-chip model of the adult human intestine demonstrates beneficial effects upon inulin treatment of gut microbiome
Joanne M. DonkersJoanne M. Donkers, ... Evita van de Steeg
Open Access | Original Article | 21 Feb 2024
Views: | Downloads:
Download PDF
Phage therapy as a revitalized weapon for treating clinical diseases
Yingjie Wang, ...Yamei Yu
Open Access | Review | 23 Sep 2025
Views: | Downloads:
Download PDF

Diet–Microbiome Interactions in Metabolic Health: From Mechanisms to Personalized Nutrition

Prof. Liping Zhao; Prof. Chenhong Zhang; Prof. Yan Zheng

Submission Deadline: 30 Nov 2026

Published articles: 0

Genome Encyclopaedia of Human Gut Microbes

Prof. Marco Ventura

Submission Deadline: 30 Oct 2026

Published articles: 0

Coming soon.

Volume 5, Issue 2 (in progress)
Volume 5, Issue 1
Volume 4, Issue 4
Volume 4, Issue 3
Volume 4, Issue 2
Volume 4, Issue 1
Volume 3, Issue 4
Volume 3, Issue 3
Volume 3, Issue 2
Volume 3, Issue 1
Volume 2, Issue 4
Volume 2, Issue 3
Volume 2, Issue 2
Volume 2, Issue 1
Volume 1, Issue 4
Volume 1, Issue 3
Volume 1, Issue 2
Volume 1, Issue 1
Microbiome Research Reports
ISSN 2771-5965 (Online)
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All published articles are preserved here permanently:

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