REFERENCES

1. Henderson B, Nair S, Pallas J, et al. Fibronectin: a multidomain host adhesin targeted by bacterial fibronectin-binding proteins. FEMS Microbiol Rev 2011;35:147-200.

2. Speziale P, Arciola CR, Pietrocola G. Fibronectin and its role in human infective diseases. Cells 2019;8:1516.

3. Malagrinò F, Pennacchietti V, Santorelli D et al. On the effects of disordered tails, supertertiary structure and quinary interactions on the folding and function of protein domains. Biomolecules 2022;12:209.

4. Valk V, van der Kaaij RM, Dijkhuizen L. The evolutionary origin and possible functional roles of FNIII domains in two Microbacterium aurum B8. A granular starch degrading enzymes, and in other carbohydrate acting enzymes. Amylase 2017;1:1.

5. Liongue C, Sertori R, Ward AC. Evolution of cytokine receptor signaling. J Immunol 2016;197:11-8.

6. Liao CY, Yu HW, Cheng CN et al. A novel pathogenic mutation on Interleukin-7 receptor leading to severe combined immunodeficiency identified with newborn screening and whole exome sequencing. J Microbiol Immunol Infect 2020;53:99-105.

7. Druszczyńska M, Godkowicz M, Kulesza J et al. Cytokine receptors-regulators of antimycobacterial immune response. Int J Mol Sci 2022;23:1112.

8. Siupka P, Hamming OT, Kang L et al. A conserved sugar bridge connected to the WSXWS motif has an important role for transport of IL-21R to the plasma membrane. Genes Immun 2015;16:405-13.

9. Szabó R, Láng O, Láng J et al. Effect of SXWS/WSXWS peptides on chemotaxis and adhesion of the macrophage-like cell line J774. J Mol Recognit 2015;28:253-60.

10. Singh S, Chaturvedi N, Rai G. De novo modeling and structural characterization of IL9-IL9 receptor complex: a potential drug target for hematopoietic stem cell therapy. Netw Model Anal Health Inform Bioinform 2020;9:1-0.

11. Kataeva IA, Seidel RD 3rd, Shah A et al. The fibronectin type 3-like repeat from the Clostridium thermocellum cellobiohydrolase CbhA promotes hydrolysis of cellulose by modifying its surface. Appl Environ Microbiol 2002;68:4292-300.

12. Nguyen KHV, Dao TK, Nguyen HD et al. Some characters of bacterial cellulases in goats’ rumen elucidated by metagenomic DNA analysis and the role of fibronectin 3 module for endoglucanase function. Anim Biosci 2021;34:867-879.

13. Miyazaki T, Park EY. Crystal structure of the Enterococcus faecalis α-N-acetylgalactosaminidase, a member of the glycoside hydrolase family 31. FEBS Lett 2020;594:2282-93.

14. Oropeza-Flores CG, Galvez-Lopez D, Vázquez-Ovando A et al. Gene structural analysis and functional prediction of Chi protein produced by the bacterium Stenotrophomonas maltophilia. Genet Mol Res 2021;20:GMR18689.

15. Jankiewicz U, Kochańska-Jeziorska A, Gałązka A. New aspects of the enzymatic breakdown of chitin: a review. Prog Chem Appl Chitin Deriv 2021;26:5-10.

16. Van Leeuwen HC, Roelofs D, Corver J et al. Phylogenetic analysis of the bacterial Pro-Pro-endopeptidase domain reveals a diverse family including secreted and membrane anchored proteins. Curr Res Microb Sci 2021;26:100024.

17. Zhao J, Ren J, Wang N et al. Crystal structure of the second fibronectin type III (FN3) domain from human collagen α1 type XX. Acta Crystallogr F Struct Biol Commun 2017;73:695-700.

18. Mascaro M, Lages I, Meroni G. Microtubular TRIM36 E3 ubiquitin ligase in embryonic development and spermatogenesis. Cells 2022;11:246.

19. Sclip A, Acuna C, Luo F et al. RIM-binding proteins recruit BK-channels to presynaptic release sites adjacent to voltage-gated Ca2+-channels. EMBO J 2018;37:e98637.

20. Gandini MA, Zamponi GW. Voltage-gated calcium channel nanodomains: molecular composition and function. FEBS J 2022;289:614-33.

21. Willaert RG, Kayacan Y, Devreese B. The Flo adhesin family. Pathogens 2021;10:1397.

22. Nezametdinova VZ, Mavletova DA, Alekseeva MG et al. Species-specific serine-threonine protein kinase Pkb2 of Bifidobacterium longum subsp. longum: genetic environment and substrate specificity. Anaerobe 2018;51:26-35.

23. Nezametdinova VZ, Yunes RA, Dukhinova MS et al. The role of the PFNA operon of bifidobacteria in the recognition of host’s immune signals: prospects for the use of the FN3 protein in the treatment of COVID-19. Int J Mol Sci 2021;22:9219.

24. Dyakov IN, Mavletova DA, Chernyshova IN et al. FN3 protein fragment containing two type III fibronectin domains from B. longum GT15 binds to human tumor necrosis factor alpha in vitro. Anaerobe 2020;65:102247.

25. Veselovsky VA, Dyachkova MS, Menyaylo EA et al. Gene networks underlying the resistance of Bifidobacterium longum to inflammatory factors. Front Immunol 2020;11:595877.

26. Danilenko VN, Alekseeva MG, Koshenko Ta et al. Species-forming PFNA operon of bifidobacteria: modules of sensor proteins Pkb2 and FN3, structure and distribution among different species and strains of bifidobacteria in human intestinal microbiome. Russ J Genet 2022;58:1059-71.

27. Averina OV, Ermolenko EI, Ratushniy AY et al. Influence of probiotics on cytokine production in the in vitro and in vivo systems. Med Immunol 2015;17:443-54.

28. Zakharevich NV, Averina OV, Klimina KM et al. Complete genome sequence of bifidobacterium longum GT15: identification and characterization of unique and global regulatory genes. Microb Ecol 2015;70:819-34.

29. Inoue H, Nojima H, Okayama H. High efficiency transformation of Escherichia coli with plasmids. Gene 1990;96:23-8.

30. Mierendorf R, Yeager K, Novy R. The pET system: your choice for expression. Innovations. Available from: http://wolfson.huji.ac.il/expression/rosetta.pdf [Last accessed on 7 Apr 2023].

31. Maniatis T. Molecular cloning. A laboratory manual; 1982.

32. Veselovsky VA, Dyachkova MS, Bespiatykh DA et al. The gene expression profile differs in growth phases of the bifidobacterium longum culture. Microorganisms 2022;10:1683.

33. Du Z, Su H, Wang W et al. The trRosetta server for fast and accurate protein structure prediction. Nat Protoc 2021;16:5634-51.

34. Broughton SE, Hercus TR, Nero TL et al. Conformational changes in the GM-CSF receptor suggest a molecular mechanism for affinity conversion and receptor signaling. Structure 2016;24:1271-81.

35. Bork P, Doolittle RF. Proposed acquisition of an animal protein domain by bacteria. Proc Natl Acad Sci USA 1992;89:8990-4.

36. Aravind L, Anantharaman V, Iyer LM. Evolutionary connections between bacterial and eukaryotic signaling systems: a genomic perspective. Curr Opin Microbiol 2003;6:490-7.

37. Ventura M, Turroni F, Zomer A et al. The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet 2009;5:e1000785.

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