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![Clustering molecular energy landscapes by adaptive network embedding](https://image.oaes.cc/e42968ff-49c2-4bba-830d-8bb9f2455abd/jmi3040.fig.9.jpg)
Figure 9. Hierarchical embeddings of the local minima network for the human telomere sequence. Left: the embeddings of the full network based on the adjacency matrix. Right: embeddings of the subnetwork near the global minimum using Metadynamics and TPT. Colors of embeddings denote commute time distance from the global minimum. TPT: Transition Path Theory.